MRIQC: individual T1w report

Summary

  • BIDS filename: sub-1017_ses-1_T1w.
  • Date and time: 2024-07-08, 03:03.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6642557692461897
cnr2.0604850737738984
efc0.5909301466227098
fber474.16708572601453
fwhmavg4.258983333333333
fwhmx4.29491
fwhmy4.48924
fwhmz3.9928
icvscsf0.19037583522632487
icvsgm0.42217320072471676
icvswm0.38745096404895835
inumed1.8977842330932617
inurange0.900558149814606
qi10.0
qi20.00991938908628019
rpvecsf33.6326688085604
rpvegm16.316216996483124
rpvewm20.934949088480423
sizex192
sizey256
sizez256
snrcsf1.7577301228062787
snrgm9.683019262405903
snrtotal10.3791380611522
snrwm19.69666479824442
snrdcsf24.7338067181955
snrdgm43.87430782686959
snrdtotal41.17391311125403
snrdwm54.91362478869701
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.6316948193117353
summarybgmad11.93030699466414
summarybgmean30.32106526377642
summarybgmedian28.587563708424568
summarybgn3146664.0
summarybgp0516.164326146245003
summarybgp9551.810547560453415
summarybgstdv11.54408005445621
summarycsfk25.26846252063017
summarycsfmad135.9427086497256
summarycsfmean495.634244966786
summarycsfmedian450.4129482060671
summarycsfn20025.0
summarycsfp05280.59576112031937
summarycsfp95729.3428661078214
summarycsfstdv256.2405320110835
summarygmk-0.27208229320141397
summarygmmad87.17496251364236
summarygmmean806.3885852309047
summarygmmedian798.9694657176733
summarygmn24076.0
summarygmp05683.3486524969339
summarygmp95950.4482600837946
summarygmstdv82.510718118004
summarywmk0.616311975424249
summarywmmad46.36075437400188
summarywmmean997.178756858747
summarywmmedian1000.0000371783972
summarywmn215631.0
summarywmp05907.3198615014553
summarywmp951075.245328322053
summarywmstdv50.76990082547863
tpmoverlapcsf0.1530718207359314
tpmoverlapgm0.46337488293647766
tpmoverlapwm0.5128465294837952
wm2max0.5749594155844155
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime16:15:33.472500
BaseResolution256
CoilCombinationMethodAdaptive Combine
CoilStringT:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber35451
DwellTime3e-06
EchoTime0.00164
FlipAngle7
ImageOrientationPatientDICOM[0.0244322, 0.999701, 0, 0, 0, -1]
ImageOrientationTextSag>Cor(1.4)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.223
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressExposition Drive 1777,Boulder- 1c711dc-,Denver,US,80301
InstitutionNameIntermountain Neuroimaging Consortium
InstitutionalDepartmentNameDepartment
InversionTime1.2
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages5
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth651
ProcedureStepDescriptionVMITTAL^frontalsub_200007
ProtocolNamemprage_5e
PulseSequenceDetails%CustomerSeq%\tfl_mgh_multiecho
ReceiveCoilNameHeadMatrix
ReconMatrixPE256
RefLinesPE32
RepetitionTime2.53
SAR0.0634842
ScanOptionsIR
ScanningSequenceGR\IR
SequenceNametfl3d5_ns
SequenceVariantSP\MP
SeriesDescriptionmprage_5e RMS
SeriesNumber3
ShimSetting[6774, 12591, -7155, -11, 279, -293, -7, 120]
SliceThickness1
SoftwareVersionssyngo MR B17
StationNameMRC35451
TxRefAmp344.425
md5sum742b6ce6945c8efcafedd2f16218ecd2
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.